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Publications

Links direct to PubMed or journals. Drop us a line if you need a pdf copy.

Preprints

Manuscripts that are submitted for publication. All links direct to bioRxiv.

Open Data

Links to our databases and the metadata.

Open Software

Our repositories on GitHub

Publications
Zeldenrust F, Calcini N, Yan X, Biljsma A, Celikel T.
PLoS Computational Biology (2024)
 
Experience-dependent regulation of dopaminergic signaling in the somatosensory cortex.
Jamal TYan XLantyer ADS, ter Horst JG, Celikel T.
Progress in Neurobiology (2024)
 
Where top-down meets bottom-up: Cell-type specific connectivity map of the whisker system.
Rault NBergmans TDelfstra NKleijnen BJZeldenrust FCelikel T.
Neuroinformatics (2024)
 
Nonlinear super-resolution signal processing allows intracellular tracking of calcium dynamics.
Calcini NLantyer AdSZeldenrust FCelikel T.
Journal of Neural Engineering (2024)
 

Neuromorphic computing hardware and neural architectures for robotics.

Sandamirskaya Y, Kaboli M, Conradt J, Celikel T.
Science Robotics (2022)
 
Kole K, Zhang Y, Jansen EJR, Brouns T, Bijlsma A, Calcini N, Yan X, Lantyer ADS, Celikel T.
Nature Neuroscience (2020)
 
da Silva Lantyer A, Calcini N, Bijlsma A, Kole K, Emmelkamp M, Peeters M, Scheenen WJJ, Zeldenrust F, Celikel T.
Gigascience (2018) 
 
Lissek T, et al
Neuron (2017)
Juczewski K, von Richthofen H, Bagni C, Celikel T, Fisone G, Krieger P.
Neurobiology Disorders (2016)
 
Select overexpression of homer1a in dorsal hippocampus impairs spatial working memory.
Celikel T, Marx V, Freudenberg F, Zivkovic A, Resnik E, Hasan MT, Licznerski P, Osten P, Rozov A, Seeburg PH, Schwarz MK.
Frontiers in Neuroscience (2007) 
 
Mice lacking the AMPA GluR1 receptor exhibit striatal hyperdopaminergia and ‘schizophrenia-related’ behaviors.
Wiedholz LM, Owens WA, Horton RE, Feyder M, Karlsson RM, Hefner K, Sprengel R, Celikel T, Daws LC, Holmes A.
Molecular Psychiatry (2008)
 
Celikel T, Szostak VA, Feldman DE.
Nature Neuroscience (2004)
 
Er: YAG laser ablation of cerebellar and cerebral tissue.
Gulsoy M, Celikel T, Kurt A, Canbeyli R, Cilesiz IF.
Lasers in Medical Science (2001)
 
Application of the 980-nm diode laser in stereotaxic surgery.
Gulsoy M, Celikel T, Kurtkaya O, Sav A, Kurt A, Canbeyli R, Cilesiz IF.
IEEE Journal of selected topics in Quantum Electronics (2000)
Preprints
NETSCOPE: Information-Theory based Network Discovery and Analysis
Bergmans T, Jamal T, Celikel T.
 
A whole-cell recording database of neuromodulatory action in the adult neocortex
Yan X, Calcini N, Safavi P, Ak A, Kole K, Zeldenrust F, Celikel T.
 
Simultaneous Detection of Dopamine and Serotonin with Carbon-based Electrodes
Khot G,  Shirtcliffe N, Celikel T.
 
Electrochemical Detection of Adrenaline and Hydrogen Peroxide on Carbon Nanotube Electrodes
Khot G, Kaboli M, Shirtcliffe N, Celikel T.
 
Carbon Nanotube Electrodes for Electrochemical Detection of Dopamine
Khot G,  Platte F, Shirtcliffe N, Celikel T.
 
Principles of Dopamine Binding to Carbon Surfaces
Khot G,  Shirtcliffe N, Celikel T.
 
Information transfer and recovery for the sense of touch
Huang C, Englitz B, Reznik A, Zeldenrust F, Celikel T.
 
Serotonergic development of active sensing
Azarfar A, Zhang Y, Alishbayli A, Schubert D, Homberg JR, Celikel T.
  
Development of adaptive motor control for tactile navigation
Azarfar A, Celikel T.
 
PASER for automated analysis of neural signals recorded in pulsating magnetic fields
Brouns T, Celikel T.
Open data
Spikes

Intracellular electrophysiological mapping of the barrel cortex database

Keywords: whole-cell intracellular recordings, somatic patch-clamp, current-clamp, voltage-clamp, acute brain slices, adult brain, barrel cortex, frozen noise, big data

A mouse crossing a gap

High speed infrared videography database of sensorimotor exploration during tactile navigation

Keywords: mystacial vibrissae, object localization, goal-directed behavior, mouse, rat, whisking

Transcriptomics pipeline

Transcriptional maps of the barrel cortex in cortical column and layer resolution and their experience dependent plasticity

Keywords: barrel cortex, somatosensory cortex, sensory deprivation, transcriptomics, RNA-sequencing

Proteomics pipeline

Proteomics of the barrel cortex in single column and layer resolution, including after induction of experience-dependent plasticity

Keywords: barrel cortex, somatosensory cortex, sensory deprivation, liquid chromatography-mass spectroscopy

Open software

Sensorimotor kit: A Python toolbox for multimodal tracking of human behavior and neural activity (work in progress.  The repo will be fully released upon manuscript publication as a preprint).

NETSCOPE MATLAB/OCTAVE toolbox for information theoretical analysis of networks.

NeuralNet-ABC MATLAB/OCTAVE toolbox for brain-wide cellular network analysis using data from Allen Brain Institute. 

Cortical representation of touch in silico MATLAB/OCTAVE toolbox to simulate cortical processing of touch in the somatosensory cortex. Also available as a NetPyne model.

ARES MATLAB/OCTAVE toolbox for subcellular analysis of calcium dynamics.

BARRELOMICS An online data analysis and visualization portal for column and cortical layer specific transcriptomics, proteomics, interactomics and more.