Publications

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Publications

Links direct to PubMed or journals. Drop us a line if you need a pdf copy.

Preprints

Manuscripts that are submitted for publication. All links direct to bioRxiv.

Open Data

Links to our databases and the metadata.

Open Software

Our repositories on GitHub

Publications
Zeldenrust F, Calcini N, Yan X, Biljsma A, Celikel T.
PLoS Computational Biology (in press)
 
Where top-down meets bottom-up: Cell-type specific connectivity map of the whisker system.
Rault N, Bergmans T, Delfstra N, Kleijnen BJ, Zeldenrust F, Celikel T.
Neuroinformatics (in press)
 
Nonlinear super-resolution signal processing allows intracellular tracking of calcium dynamics.
Calcini N, Lantyer AdS, Zeldenrust F, Celikel T.
Journal of Neural Engineering (in press)
 

Neuromorphic computing hardware and neural architectures for robotics.

Sandamirskaya Y, Kaboli M, Conradt J, Celikel T.
Science Robotics (2022)
 
Cortical Representation of Touch in Silico.
Huang C, Zeldenrust F, Celikel T.
Neuroinformatics (2022)
 
Assessing the state of consciousness for individual patients using complex, statistical stimuli.
Górska U, Rupp A, Celikel T, Englitz B.
Neuroimage Clinical (2021)
 
Assessing the utility of Magneto to control neuronal excitability in the somatosensory cortex.
Kole K, Zhang Y, Jansen EJR, Brouns T, Bijlsma A, Calcini N, Yan X, Lantyer ADS, Celikel T.
Nature Neuroscience (2020)
 
Prominent Inhibitory Projections Guide Sensorimotor Computation: An Invertebrate Perspective.
Hughes S, Celikel T.
Bioessays (2019)
 
Real-time contextual feedback for close-loop control of navigation.
Lim J, Celikel T.
Journal of Neural Engineering (2019)
 
Spectral Weighting Underlies Perceived Sound Elevation.
Zonooz B, Arani E, Körding KP, Aalbers PATR, Celikel T, Van Opstal AJ.
Nature Scientific Reports (2019)
 
Neocortical Microdissection at Columnar and Laminar Resolution for Molecular Interrogation.
Kole K, Celikel T.
Current Protocols in Neuroscience (2019)
 
A databank for intracellular electrophysiological mapping of the adult somatosensory cortex.
da Silva Lantyer A, Calcini N, Bijlsma A, Kole K, Emmelkamp M, Peeters M, Scheenen WJJ, Zeldenrust F, Celikel T.
Gigascience (2018) 
 
An open-source high-speed infrared videography database to study the principles of active sensing in freely navigating rodents.
Azarfar A, Zhang Y, Alishbayli A, Miceli S, Kepser L, van der Wielen D, van de Moosdijk M, Homberg J, Schubert D, Proville R, Celikel T.
Gigascience (2018)
 
Neural coding: A single neuron’s perspective.
Azarfar A, Calcini N, Huang C, Zeldenrust F, Celikel T.
Neuroscience and Biobehavioral Reviews (2018) 
 
Evidence Integration in Natural Acoustic Textures during Active and Passive Listening.
Górska U, Rupp A, Boubenec Y, Celikel T, Englitz B.
eNeuro (2018) 
 
Cellular diversity of the somatosensory cortical map plasticity.
Kole K, Scheenen W, Tiesinga P, Celikel T.
Neuroscience and Biobehavioral Reviews (2018)
 
Building Bridges through Science.
Lissek T, et al
Neuron (2017)
 
Proteomic landscape of the primary somatosensory cortex upon sensory deprivation.
Kole K, Lindeboom RGH, Baltissen MPA, Jansen PWTC, Vermeulen M, Tiesinga P, Celikel T.
Gigascience (2017)
 
Transcriptional mapping of the primary somatosensory cortex upon sensory deprivation.
Kole K, Komuro Y, Provaznik J, Pistolic J, Benes V, Tiesinga P, Celikel T.
Gigascience (2017)
 
High-precision spatial localization of mouse vocalizations during social interaction.
Heckman JJ, Proville R, Heckman GJ, Azarfar A, Celikel T, Englitz B.
Nature Scientific Reports (2017)
 
Reduced Inhibition within Layer IV of Sert Knockout Rat Barrel Cortex is Associated with Faster Sensory Integration.
Miceli S, Nadif Kasri N, Joosten J, Huang C, Kepser L, Proville R, Selten MM, van Eijs F, Azarfar A, Homberg JR, Celikel T, Schubert D.
Cerebral Cortex (2017)
 
Somatosensory map expansion and altered processing of tactile inputs in a mouse model of fragile X syndrome.
Juczewski K, von Richthofen H, Bagni C, Celikel T, Fisone G, Krieger P.
Neurobiology Disorders (2016)
 
Hippocampal GluA1 expression in Gria1-/- mice only partially restores spatial memory performance deficits.
Freudenberg F, Resnik E, Kolleker A, Celikel T, Sprengel R, Seeburg PH.
Neurobiology of Learning and Memory (2016) 
 
Adaptive Spike Threshold Enables Robust and Temporally Precise Neuronal Encoding.
Huang C, Resnik A, Celikel T, Englitz B.
PLoS Computational Biology (2016) 
 
Determinants of the mouse ultrasonic vocal structure and repertoire.
Heckman J, McGuinness B, Celikel T, Englitz B.
Neuroscience and Biobehavioral Reviews (2016) 
 
A Developmental Switch for Hebbian Plasticity.
Martens MB, Celikel T, Tiesinga PH.
PLoS Computational Biology (2015) 
 
The role of α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors in depression: central mediators of pathophysiology and antidepressant activity?
Freudenberg F, Celikel T, Reif A.
Neuroscience and Biobehavioral Reviews (2015) 
 
Nanophysiology: Bridging synapse ultrastructure, biology, and physiology using scanning ion conductance microscopy.
Scheenen WJ, Celikel T.
Synapse (2015) 
 
Tactile object localization by anticipatory whisker motion.
Voigts J, Herman DH, Celikel T.
Journal of Neurophysiology (2015) 
 
Circuit mechanisms of GluA1-dependent spatial working memory.
Freudenberg F, Marx V, Seeburg PH, Sprengel R, Celikel T.
Hippocampus (2013)
 
Spontaneous oscillations in intrinsic signals reveal the structure of cerebral vasculature.
Stewart RS, Huang C, Arnett MT, Celikel T.
Journal of Neurophysiology (2013) 
 
Neuromorphic network implementation of the somatosensory cortex
Joshi J, Parker AC, Celikel T.
IEEE/EMBS Conference on Neural Engineering (2013)
 
Loss of Dickkopf-1 restores neurogenesis in old age and counteracts cognitive decline.
Seib DR, Corsini NS, Ellwanger K, Plaas C, Mateos A, Pitzer C, Niehrs C, Celikel T, Martin-Villalba A.
Cell Stem Cell (2013) 
 
GluA1 and its PDZ-interaction: a role in experience-dependent behavioral plasticity in the forced swim test.
Freudenberg F, Marx V, Mack V, Layer LE, Klugmann M, Seeburg PH, Sprengel R, Celikel T.
Neurobiology Disorders (2013) 
 
Recent developments in optical neuromodulation technologies.
Kos A, Loohuis NF, Glennon JC, Celikel T, Martens GJ, Tiesinga PH, Aschrafi A.
Molecular Neurobiology (2013) 
 
Mapping functional brain activation using [14C]-iodoantipyrine in male serotonin transporter knockout mice.
Pang RD, Wang Z, Klosinski LP, Guo Y, Herman DH, Celikel T, Dong HW, Holschneider DP.
PLoS One (2011)
 
The death receptor CD95 activates adult neural stem cells for working memory formation and brain repair.
Corsini NS, Sancho-Martinez I, Laudenklos S, Glagow D, Kumar S, Letellier E, Koch P, Teodorczyk M, Kleber S, Klussmann S, Wiestler B, Brüstle O, Mueller W, Gieffers C, Hill O, Thiemann M, Seedorf M, Gretz N, Sprengel R, Celikel T, Martin-Villalba A.
Cell Stem Cell (2009)
 
Select overexpression of homer1a in dorsal hippocampus impairs spatial working memory.
Celikel T, Marx V, Freudenberg F, Zivkovic A, Resnik E, Hasan MT, Licznerski P, Osten P, Rozov A, Seeburg PH, Schwarz MK.
Frontiers in Neuroscience (2007) 
 
Mice lacking the AMPA GluR1 receptor exhibit striatal hyperdopaminergia and ‘schizophrenia-related’ behaviors.
Wiedholz LM, Owens WA, Horton RE, Feyder M, Karlsson RM, Hefner K, Sprengel R, Celikel T, Daws LC, Holmes A.
Molecular Psychiatry (2008)
 
Unsupervised whisker tracking in unrestrained behaving animals.
Voigts J, Sakmann B, Celikel T.
Journal of Neurophysiology (2008) 
 
Ongoing in vivo experience triggers synaptic metaplasticity in the neocortex.
Clem RL, Celikel T, Barth AL.
Science (2008) 
 
Sensory integration across space and in time for decision making in the somatosensory system of rodents.
Celikel T, Sakmann B.
Proc Natl Acad Sci U S A. (2007) 
 
Forebrain-specific glutamate receptor B deletion impairs spatial memory but not hippocampal field long-term potentiation.
Shimshek DR, Jensen V, Celikel T, Geng Y, Schupp B, Bus T, Mack V, Marx V, Hvalby Ø, Seeburg PH, Sprengel R.
Journal of Neuroscience (2006) 
 
Inhibitory sharpening of receptive fields contributes to whisker map plasticity in rat somatosensory cortex.
Foeller E, Celikel T, Feldman DE.
Journal of Neurophysiology (2005)
 
Modulation of spike timing by sensory deprivation during induction of cortical map plasticity.
Celikel T, Szostak VA, Feldman DE.
Nature Neuroscience (2004)
 
Long-term depression induced by sensory deprivation during cortical map plasticity in vivo.
Allen CB, Celikel T, Feldman DE.
Nature Neuroscience (2004) 
 
Stereotactic use of the 980-nm diode laser in rat cortical and subcortical tissues.
Gulsoy M, Celikel T, Kurtkaya O, Sav A, Kurt A, Canbeyli R, Cilesiz IF.
Clinical Lasers and Diagnostics (2001)
 
Er: YAG laser ablation of cerebellar and cerebral tissue.
Gulsoy M, Celikel T, Kurt A, Canbeyli R, Cilesiz IF.
Lasers in Medical Science (2001)
 
Application of the 980-nm diode laser in stereotaxic surgery.
Gulsoy M, Celikel T, Kurtkaya O, Sav A, Kurt A, Canbeyli R, Cilesiz IF.
IEEE Journal of selected topics in Quantum Electronics (2000)
Preprints
NETSCOPE: Information-Theory based Network Discovery and Analysis
Bergmans T, Jamal T, Celikel T.
 
A whole-cell recording database of neuromodulatory action in the adult neocortex
Yan X, Calcini N, Safavi P, Ak A, Kole K, Zeldenrust F, Celikel T.
 
Simultaneous Detection of Dopamine and Serotonin with Carbon-based Electrodes
Khot G,  Shirtcliffe N, Celikel T.
 
Electrochemical Detection of Adrenaline and Hydrogen Peroxide on Carbon Nanotube Electrodes
Khot G, Kaboli M, Shirtcliffe N, Celikel T.
 
Carbon Nanotube Electrodes for Electrochemical Detection of Dopamine
Khot G,  Platte F, Shirtcliffe N, Celikel T.
 
Principles of Dopamine Binding to Carbon Surfaces
Khot G,  Shirtcliffe N, Celikel T.
 
Information transfer and recovery for the sense of touch
Huang C, Englitz B, Reznik A, Zeldenrust F, Celikel T.
 
Serotonergic development of active sensing
Azarfar A, Zhang Y, Alishbayli A, Schubert D, Homberg JR, Celikel T.
  
Development of adaptive motor control for tactile navigation
Azarfar A, Celikel T.
 
PASER for automated analysis of neural signals recorded in pulsating magnetic fields
Brouns T, Celikel T.
Open data
Spikes

Intracellular electrophysiological mapping of the barrel cortex database

Keywords: whole-cell intracellular recordings, somatic patch-clamp, current-clamp, voltage-clamp, acute brain slices, adult brain, barrel cortex, frozen noise, big data

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A mouse crossing a gap

High speed infrared videography database of sensorimotor exploration during tactile navigation

Keywords: mystacial vibrissae, object localization, goal-directed behavior, mouse, rat, whisking

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Transcriptomics pipeline

Transcriptional maps of the barrel cortex in cortical column and layer resolution and their experience dependent plasticity

Keywords: barrel cortex, somatosensory cortex, sensory deprivation, transcriptomics, RNA-sequencing

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Proteomics pipeline

Proteomics of the barrel cortex in single column and layer resolution, including after induction of experience-dependent plasticity

Keywords: barrel cortex, somatosensory cortex, sensory deprivation, liquid chromatography-mass spectroscopy

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Open software

Sensorimotor kit: A Python toolbox for multimodal tracking of human behavior and neural activity (work in progress.  The repo will be fully released upon manuscript publication as a preprint).

NETSCOPE MATLAB/OCTAVE toolbox for information theoretical analysis of networks.

NeuralNet-ABC MATLAB/OCTAVE toolbox for brain-wide cellular network analysis using data from Allen Brain Institute. 

Cortical representation of touch in silico MATLAB/OCTAVE toolbox to simulate cortical processing of touch in the somatosensory cortex. Also available as a NetPyne model.

ARES MATLAB/OCTAVE toolbox for subcellular analysis of calcium dynamics.

BARRELOMICS An online data analysis and visualization portal for column and cortical layer specific transcriptomics, proteomics, interactomics and more.